GUI Tools

This directory contains documentation for the various GUI tools available in CLAH Image Analysis.

Available GUIs

Motion Correction GUI

A graphical interface to create jobs to run motion correcting and/or segmentation tasks of calcium imaging data. Provides tools for:

• Motion correction parameter adjustment
• Real-time preview of correction results
• Batch processing capabilities

SegDict Utility

A web-based interface for viewing and evaluating segments from the segDict. Features include:

• Component evaluation and classification
• Spatial and temporal visualization
• Neural network integration
• Export capabilities

1P Cropping Utility

A web-based utility for cropping 1-photon imaging data (.isxd files) before processing.

Access

All web-based GUIs can be accessed through your server at their respective ports. Default ports are configured in Application settings.